Recent papers on Microbiome Analysis Methods

Sorted by publication year (newest first) via OpenAlex. List regenerates every 24h.

1. Multi-method keystone screening reveals distributed ecological resilience in aquaponic microbiomes

   2026 · Zenodo (CERN European Organization for Nuclear Research) · Lobanov, Victor, Rezaei, Shima, Higgins, Brendan et al.

   2026

2. Microbiome mediation analysis: methods, assumptions, and practical considerations

   2026 · Frontiers in Cellular and Infection Microbiology · Jiang, Ziman, Li, Gen

   2026

3. What criteria, thresholds and methods are used to define reference soil microbiomes in studies comparing restored and reference peatlands in boreal and temperate systems?

   2026 · Proceed · Ramberg, Ellinor, Lõhmus, Asko, Runnel, Kadri

   2026

4. A stochastic method to estimate a zero-inflated two-part mixed model for human microbiome data

   2026 · Statistical Modelling · Barrera, John, Meza, Cristian, Arribas‐Gil, Ana

   2026

5. Su1210 ENDOSCOPIC SWAB SAMPLING AS A NOVEL METHOD FOR GASTRIC MICROBIOME PROFILING: A PILOT STUDY COMPARED WITH TISSUE BIOPSY

   2026 · Gastroenterology · Park, Gihong, Ahn, Byeong Yun, CHUNG, Hyunsoo

   2026

6. IP55-10 CLINICAL IMPLICATIONS OF SAMPLING METHOD IN DEFINING THE URINARY MICROBIOME: ARE CATHETERIZED URINE SAMPLES A RELIABLE SURROGATE TO SUPRAPUBIC ASPIRATES?

   2026 · The Journal of Urology · Gu, Cindy, Larson, Kaitlyn, Henao, Lina M. et al.

   2026

7. If you give a mouse a poopsicle: a novel fecal microbiota transplant method for exploring the role of the gut microbiome in stress-related outcomes in mice

   2026 · Frontiers in Immunology · Tschang, Monica A, Vuong, Ronin Deo-Campo, Eilers, Baylee et al.

   2026

8. Peer Review Report For: A novel method and model system to investigate plant–microbiome coevolution [version 1; peer review: 1 approved with reservations]

   2026 · Henry, Lucas P.

   2026

9. Navigating multi-omic integration methods for human microbiome research

   2026 · Nature Microbiology · Muller, Efrat, Bamberger, Tal, Borenstein, Elhanan

   2026

10. Microbiota, Microbiome, and Metagenome: Foundational Concepts, Analytical Methods, and Applications in Drug Development

    2026 · Zenodo (CERN European Organization for Nuclear Research) · study, microbiome

    2026

11. Early pregnancy is characterized by a significant decrease in the diversity of the oral microbiome and strong associations with lifestyle and conception method

    2026 · Journal of Oral Microbiology · Finkelstein, Shani, Frishman, Sigal, Turjeman, Sondra et al.

    2026

12. A novel method and model system to investigate plant–microbiome coevolution

    2026 · Open Research Europe · Bartoli, Claudia, Guillerm-Erckelboudt, Anne-Yvonne, Norest, Manon et al.

    2026

13. Holo-2bRAD: A Hologenomic Method for High-Resolution Analysis of Coral Microbiomes During Bleaching

    2026 · Microorganisms · Wang, Zhuqing, Ma, Cen, Huang, Heng et al.

    2026

14. Mapping the human Microbiome, current detection methods, health implications of Dysbiosis, limitation in contemporary therapeutic strategies, and future directions in Microbiome medicine

    2026 · Biomedical and Therapeutics Letters · Hota, Tannistha, Verma, Swati, Javalage, Swaminath et al.

    2026

15. SPATIAL SEQUENCING METHODS TO MAP THE HOST-MICROBIOME INTERFACE

    2026 · eCommons (Cornell University) · Ntekas, Ioannis

    2026

16. Optimizing cetacean blow collection methods under controlled conditions: implications for further non-invasive UAV-based sampling of the cetacean respiratory microbiome in the wild

    2026 · Animal Microbiome · Dugény, Elyne, Ceolotto, Luca, Franch, Rafaella et al.

    2026

17. Integrating host-microbiome multi-omics with machine learning: methods, benchmarks, and translational applications

    2026 · Science China Life Sciences · Shen, Haibo, Zhang, Longlin, Ma, Xiaokang et al.

    2026

18. Processing of Biological and Municipal Solid Waste Using Insect Larvae and DNA Metabarcoding as a Promising Method for Monitoring the Microbiome of the Resulting Products

    2026 · Ecology and Industry of Russia · Gafarova, E. R., Kanaikin, D. P., Smirnov, A. V.

    2026

19. Diversity of fungi on the epidermis of apples: exploring the microbiome with a cost-efficient user-friendly method

    2026 · Acta Horticulturae · Vettermann, A., Büchele, F., Neuwald, D.A. et al.

    2026

20. The role of the reproductive tract microbiome in gynecological pathology: modern methods for diagnostics and correction of disorders

    2026 · Journal of obstetrics and women s diseases · Naydenova, Sofia M., Dzukaeva, Fatima I., Kuzmina, Ekaterina A. et al.

    2026

21. Preservation of Microorganisms and Microbiomes: Methods, Impacts, and Future Prospects

    2026 · Biopreservation and Biobanking · Gómez-Godínez, Lorena Jacqueline, Hernández-Cruz, Elías, Guzmán-González, Russia Daniela et al.

    2026

22. Effects of hygiene methods on the microbiome and resistome of poultry litter

    2026 · Annals of Animal Science · Racewicz, Przemysław, Nowaczewski, S., Hejdysz, Marcin et al.

    2026

23. Correction: Introducing the UK Crop Microbiome Cryobank data resource, AgMicrobiomeBase, with case studies and methods on metabarcoding analyses

    2026 · Environmental Microbiome · Yau, Payton To, Taketani, Rodrigo G., Bonnin, J. Miguel et al.

    2026

24. Nanopore sequencing of the Tunisian gut microbiome: effect of the DNA extraction methods

    2026 · Brazilian Journal of Microbiology · Nihel, Ammous-Boukhris, Rania, Abdelmaksoud-Dammak, Hamadou, Oumarou Hama et al.

    2026

25. A non-invasive method for profiling the gut microbiome and virome of honey bee queens

    2026 · Scientific Reports · Holmes, Leslie A., Veiga, Patricia Wolf, Pettis, Jeffery S. et al.

    2026

26. Optimising Vaginal Microbiome Profiling for Clinical Translation: A Comparative Assessment of Sample Storage Methods and a Vagina-Specific 16S rRNA Gene Database

    2026 · Microorganisms · Alishum, Ali, Keelan, Jeffrey A., Penova-Veselinovic, Blagica et al.

    2026